STRINGSTRING
AGI22375.1 AGI22375.1 AGI22374.1 AGI22374.1 AGI22376.1 AGI22376.1 AGI22373.1 AGI22373.1 AGI25746.1 AGI25746.1 cca cca AGI25146.1 AGI25146.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
AGI22375.1Hypothetical protein; Belongs to the UPF0229 family. (423 aa)    
Predicted Functional Partners:
AGI22374.1
SpoVR family protein.
 
  
 0.995
AGI22376.1
PrkA family serine protein kinase; COG2766 Putative Ser protein kinase.
 
  
 0.991
AGI22373.1
Hypothetical protein.
       0.644
AGI25746.1
PhoH family protein; COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH.
   
    0.450
cca
2',3'-cyclic phosphodiesterase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
       0.447
AGI25146.1
Hypothetical protein.
   
    0.438
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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