STRINGSTRING
AGI22631.1 AGI22631.1 AGI22632.1 AGI22632.1 AGI23277.1 AGI23277.1 AGI26234.1 AGI26234.1 rpoB rpoB rpoC rpoC rpoA rpoA rpoZ rpoZ AGI22630.1 AGI22630.1 AGI24251.1 AGI24251.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI22631.1COG2378 Predicted transcriptional regulator. (229 aa)    
Predicted Functional Partners:
AGI22632.1
Glyoxalase; COG0346 Lactoylglutathione lyase and related lyases.
     0.950
AGI23277.1
COG0625 Glutathione S-transferase.
    
 0.668
AGI26234.1
Transcriptional regulator; COG3708 Uncharacterized protein conserved in bacteria.
 
     0.529
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.514
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.495
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.495
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.495
AGI22630.1
Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.480
AGI24251.1
COG0640 Predicted transcriptional regulators.
  
     0.435
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.