STRINGSTRING
AGI22637.1 AGI22637.1 AGI23556.1 AGI23556.1 AGI23873.1 AGI23873.1 AGI22636.1 AGI22636.1 AGI26104.1 AGI26104.1 AGI22682.1 AGI22682.1 AGI22634.1 AGI22634.1 AGI22633.1 AGI22633.1 AGI22635.1 AGI22635.1 AGI22638.1 AGI22638.1 xseB xseB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI22637.1COG1802 Transcriptional regulators. (224 aa)    
Predicted Functional Partners:
AGI23556.1
COG2186 Transcriptional regulators.
 
  
 0.678
AGI23873.1
COG2186 Transcriptional regulators.
 
  
 0.665
AGI22636.1
COG3938 Proline racemase; Belongs to the proline racemase family.
 
   
 0.664
AGI26104.1
Pyruvate dehydrogenase complex repressor; COG2186 Transcriptional regulators.
 
  
 0.651
AGI22682.1
Transcriptional regulator, GntR family protein; COG2186 Transcriptional regulators.
 
  
 0.596
AGI22634.1
Ferredoxin; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
       0.561
AGI22633.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
       0.558
AGI22635.1
FAD-dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
    0.524
AGI22638.1
Geranyltranstransferase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.494
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.494
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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