AGI22866.1 protein (Pseudomonas sp. ATCC 13867)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGI22866.1

Pilin biogenesis protein; COG1459 Type II secretory pathway, component PulF. (405 aa)

Predicted Functional Partners:

AGI22867.1

0.986

AGI22865.1

0.973

AGI25286.1

0.942

AGI26569.1

0.935

AGI26540.1

0.880

AGI22242.1

0.831

AGI26394.1

0.818

AGI22243.1

0.807

AGI23730.1

0.795

AGI24516.1

0.795

Your Current Organism:

Pseudomonas sp. ATCC 13867

NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI22242.1	AGI22243.1	H681_01800	H681_01805	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	COG5008 Tfp pilus assembly protein, ATPase PilU.	0.650
AGI22242.1	AGI22865.1	H681_01800	H681_04925	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.871
AGI22242.1	AGI22866.1	H681_01800	H681_04930	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	Pilin biogenesis protein; COG1459 Type II secretory pathway, component PulF.	0.831
AGI22242.1	AGI22867.1	H681_01800	H681_04935	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	Type 4 fimbrial biogenesis protein PilB; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.429
AGI22242.1	AGI25286.1	H681_01800	H681_17090	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	Putative type II secretion protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.432
AGI22242.1	AGI26394.1	H681_01800	H681_22635	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	COG4972 Tfp pilus assembly protein, ATPase PilM.	0.801
AGI22242.1	AGI26540.1	H681_01800	H681_23365	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	Pilus biogenesis protein tapA precursor; COG4969 Tfp pilus assembly protein, major pilin PilA; Belongs to the N-Me-Phe pilin family.	0.747
AGI22242.1	AGI26569.1	H681_01800	H681_23510	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.439
AGI22243.1	AGI22242.1	H681_01805	H681_01800	COG5008 Tfp pilus assembly protein, ATPase PilU.	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	0.650
AGI22243.1	AGI22865.1	H681_01805	H681_04925	COG5008 Tfp pilus assembly protein, ATPase PilU.	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.812
AGI22243.1	AGI22866.1	H681_01805	H681_04930	COG5008 Tfp pilus assembly protein, ATPase PilU.	Pilin biogenesis protein; COG1459 Type II secretory pathway, component PulF.	0.807
AGI22243.1	AGI26394.1	H681_01805	H681_22635	COG5008 Tfp pilus assembly protein, ATPase PilU.	COG4972 Tfp pilus assembly protein, ATPase PilM.	0.795
AGI22243.1	AGI26540.1	H681_01805	H681_23365	COG5008 Tfp pilus assembly protein, ATPase PilU.	Pilus biogenesis protein tapA precursor; COG4969 Tfp pilus assembly protein, major pilin PilA; Belongs to the N-Me-Phe pilin family.	0.712
AGI22865.1	AGI22242.1	H681_04925	H681_01800	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching motility protein PilT; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.	0.871
AGI22865.1	AGI22243.1	H681_04925	H681_01805	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	COG5008 Tfp pilus assembly protein, ATPase PilU.	0.812
AGI22865.1	AGI22866.1	H681_04925	H681_04930	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Pilin biogenesis protein; COG1459 Type II secretory pathway, component PulF.	0.973
AGI22865.1	AGI22867.1	H681_04925	H681_04935	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type 4 fimbrial biogenesis protein PilB; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.972
AGI22865.1	AGI23730.1	H681_04925	H681_09280	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching motility protein; COG5008 Tfp pilus assembly protein, ATPase PilU.	0.801
AGI22865.1	AGI24516.1	H681_04925	H681_13230	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching motility protein; COG5008 Tfp pilus assembly protein, ATPase PilU.	0.800
AGI22865.1	AGI25286.1	H681_04925	H681_17090	Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Putative type II secretion protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.882