STRINGSTRING
AGI23109.1 AGI23109.1 AGI25438.1 AGI25438.1 AGI23870.1 AGI23870.1 AGI22923.1 AGI22923.1 AGI24977.1 AGI24977.1 AGI25373.1 AGI25373.1 AGI25455.1 AGI25455.1 AGI22966.1 AGI22966.1 AGI25116.1 AGI25116.1 AGI25791.1 AGI25791.1 AGI24410.1 AGI24410.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI23109.1Basic amino acid/basic peptide/imipenem outer membrane porin OprD. (442 aa)    
Predicted Functional Partners:
AGI25438.1
Basic amino acid/basic peptide/imipenem outer membrane porin OprD.
  
  
 
0.902
AGI23870.1
Hypothetical protein.
  
     0.607
AGI22923.1
Hypothetical protein; COG3471 Predicted periplasmic/secreted protein.
  
     0.583
AGI24977.1
Hypothetical protein.
  
     0.542
AGI25373.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.523
AGI25455.1
Hypothetical protein.
  
     0.512
AGI22966.1
Anti-sigma-factor antagonist.
  
     0.508
AGI25116.1
Hypothetical protein.
  
     0.483
AGI25791.1
COG3141 Uncharacterized protein conserved in bacteria.
  
     0.469
AGI24410.1
COG0583 Transcriptional regulator.
  
     0.462
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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