STRINGSTRING
AGI23181.1 AGI23181.1 AGI23182.1 AGI23182.1 der der cmk cmk AGI23183.1 AGI23183.1 AGI23184.1 AGI23184.1 AGI24209.1 AGI24209.1 AGI26710.1 AGI26710.1 era era AGI25255.1 AGI25255.1 AGI23180.1 AGI23180.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI23181.1COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (231 aa)    
Predicted Functional Partners:
AGI23182.1
Hypothetical protein.
  
    0.849
der
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.693
cmk
COG0283 Cytidylate kinase.
 
  
 0.646
AGI23183.1
Hypothetical protein.
       0.573
AGI23184.1
Hypothetical protein.
       0.573
AGI24209.1
COG0708 Exonuclease III.
  
    0.521
AGI26710.1
Catabolite repression control protein; COG0708 Exonuclease III.
  
    0.521
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.477
AGI25255.1
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.476
AGI23180.1
COG1376 Uncharacterized protein conserved in bacteria.
       0.465
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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