STRINGSTRING
AGI23208.1 AGI23208.1 AGI23207.1 AGI23207.1 AGI25373.1 AGI25373.1 AGI23870.1 AGI23870.1 AGI25755.1 AGI25755.1 AGI26025.1 AGI26025.1 AGI23206.1 AGI23206.1 AGI23205.1 AGI23205.1 AGI24977.1 AGI24977.1 AGI23204.1 AGI23204.1 AGI22599.1 AGI22599.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI23208.1Outer membrane porin. (433 aa)    
Predicted Functional Partners:
AGI23207.1
Tricarboxylate transport protein TctC; COG3181 Uncharacterized protein conserved in bacteria.
  
    0.820
AGI25373.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.688
AGI23870.1
Hypothetical protein.
  
     0.678
AGI25755.1
Alginate biosynthetic protein AlgK; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.668
AGI26025.1
Hypothetical protein.
  
     0.661
AGI23206.1
Hypothetical protein.
  
    0.659
AGI23205.1
COG3333 Uncharacterized protein conserved in bacteria.
  
    0.657
AGI24977.1
Hypothetical protein.
  
     0.656
AGI23204.1
Hypothetical protein; COG3180 Putative ammonia monooxygenase.
  
    0.654
AGI22599.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.644
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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