Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGI23217.1 | AGI23218.1 | H681_06705 | H681_06710 | Anti-sigma factor; COG3073 Negative regulator of sigma E activity. | Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity. | 0.995 |
| AGI23217.1 | AGI23219.1 | H681_06705 | H681_06715 | Anti-sigma factor; COG3073 Negative regulator of sigma E activity. | Positive regulator for alginate biosynthesis MucC. | 0.741 |
| AGI23217.1 | AGI23220.1 | H681_06705 | H681_06720 | Anti-sigma factor; COG3073 Negative regulator of sigma E activity. | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. | 0.870 |
| AGI23217.1 | algU | H681_06705 | H681_06700 | Anti-sigma factor; COG3073 Negative regulator of sigma E activity. | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.969 |
| AGI23218.1 | AGI23217.1 | H681_06710 | H681_06705 | Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity. | Anti-sigma factor; COG3073 Negative regulator of sigma E activity. | 0.995 |
| AGI23218.1 | AGI23219.1 | H681_06710 | H681_06715 | Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity. | Positive regulator for alginate biosynthesis MucC. | 0.967 |
| AGI23218.1 | AGI23220.1 | H681_06710 | H681_06720 | Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity. | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. | 0.650 |
| AGI23218.1 | algU | H681_06710 | H681_06700 | Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity. | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.869 |
| AGI23218.1 | recO | H681_06710 | H681_06750 | Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.544 |
| AGI23219.1 | AGI23217.1 | H681_06715 | H681_06705 | Positive regulator for alginate biosynthesis MucC. | Anti-sigma factor; COG3073 Negative regulator of sigma E activity. | 0.741 |
| AGI23219.1 | AGI23218.1 | H681_06715 | H681_06710 | Positive regulator for alginate biosynthesis MucC. | Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity. | 0.967 |
| AGI23219.1 | AGI23220.1 | H681_06715 | H681_06720 | Positive regulator for alginate biosynthesis MucC. | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. | 0.815 |
| AGI23219.1 | algU | H681_06715 | H681_06700 | Positive regulator for alginate biosynthesis MucC. | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.599 |
| AGI23220.1 | AGI23217.1 | H681_06720 | H681_06705 | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. | Anti-sigma factor; COG3073 Negative regulator of sigma E activity. | 0.870 |
| AGI23220.1 | AGI23218.1 | H681_06720 | H681_06710 | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. | Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity. | 0.650 |
| AGI23220.1 | AGI23219.1 | H681_06720 | H681_06715 | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. | Positive regulator for alginate biosynthesis MucC. | 0.815 |
| AGI23220.1 | algU | H681_06720 | H681_06700 | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.559 |
| AGI23220.1 | recO | H681_06720 | H681_06750 | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.432 |
| AGI24511.1 | algU | H681_13205 | H681_06700 | Transmembrane regulator PrtR; COG5662 Predicted transmembrane transcriptional regulator (anti-sigma factor). | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.475 |
| algU | AGI23217.1 | H681_06700 | H681_06705 | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma factor; COG3073 Negative regulator of sigma E activity. | 0.969 |
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