STRINGSTRING
AGI23223.1 AGI23223.1 rnc rnc era era AGI25669.1 AGI25669.1 AGI25668.1 AGI25668.1 AGI23328.1 AGI23328.1 recO recO AGI25192.1 AGI25192.1 AGI26391.1 AGI26391.1 AGI25666.1 AGI25666.1 AGI25665.1 AGI25665.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI23223.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.861
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.841
AGI25669.1
Type IV pilus modification protein PilV.
  
   
 0.724
AGI25668.1
COG4966 Tfp pilus assembly protein PilW.
 
   
 0.699
AGI23328.1
Hypothetical protein.
  
     0.687
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.659
AGI25192.1
Hypothetical protein.
  
     0.658
AGI26391.1
Type 4 fimbrial biogenesis protein PilP; COG3168 Tfp pilus assembly protein PilP.
  
   
 0.645
AGI25666.1
COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1.
 
   
 0.635
AGI25665.1
Methylation; COG4970 Tfp pilus assembly protein FimT.
 
   
 0.634
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.