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AGI23377.1 AGI23377.1 AGI22753.1 AGI22753.1 AGI23540.1 AGI23540.1 AGI26312.1 AGI26312.1 AGI21994.1 AGI21994.1 AGI23654.1 AGI23654.1 arnD arnD AGI24950.1 AGI24950.1 dapE dapE AGI26631.1 AGI26631.1 AGI26369.1 AGI26369.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AGI23377.1Family 2 glycosyl transferase; COG5309 Exo-beta-1,3-glucanase. (865 aa)    
Predicted Functional Partners:
AGI22753.1
Motility regulator; COG2199 FOG: GGDEF domain.
  
  
 0.633
AGI23540.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
  
  
 0.633
AGI26312.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase; COG2202 FOG: PAS/PAC domain.
  
  
 0.633
AGI21994.1
Hypothetical protein; COG0438 Glycosyltransferase.
  
 
 0.617
AGI23654.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.589
arnD
4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase ArnD; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily.
  
  
 0.576
AGI24950.1
COG0726 Predicted xylanase/chitin deacetylase.
  
  
 0.576
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
     
 0.567
AGI26631.1
Tyrosine-protein kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
  
 0.536
AGI26369.1
Hypothetical protein; COG2203 FOG: GAF domain.
  
  
 0.530
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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