AGI23696.1 protein (Pseudomonas sp. ATCC 13867)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGI23696.1

CheW domain-containing protein. (297 aa)

Predicted Functional Partners:

AGI23697.1

0.985

AGI23691.1

0.972

AGI23626.1

0.953

AGI23690.1

0.936

AGI25129.1

0.934

AGI22045.1

0.927

AGI22064.1

0.924

AGI22044.1

0.921

cheB-2

0.920

AGI22877.1

0.919

Your Current Organism:

Pseudomonas sp. ATCC 13867

NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI22044.1	AGI22045.1	H681_00810	H681_00815	COG0835 Chemotaxis signal transduction protein.	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	0.998
AGI22044.1	AGI22064.1	H681_00810	H681_00910	COG0835 Chemotaxis signal transduction protein.	Chemotaxis sensory transducer; COG0840 Methyl-accepting chemotaxis protein.	0.967
AGI22044.1	AGI22877.1	H681_00810	H681_04985	COG0835 Chemotaxis signal transduction protein.	Putative chemotaxis transducer; COG0840 Methyl-accepting chemotaxis protein.	0.970
AGI22044.1	AGI23626.1	H681_00810	H681_08760	COG0835 Chemotaxis signal transduction protein.	COG0835 Chemotaxis signal transduction protein.	0.820
AGI22044.1	AGI23690.1	H681_00810	H681_09080	COG0835 Chemotaxis signal transduction protein.	Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).	0.749
AGI22044.1	AGI23691.1	H681_00810	H681_09085	COG0835 Chemotaxis signal transduction protein.	CheA signal transduction histidine kinase; COG0643 Chemotaxis protein histidine kinase and related kinases.	0.993
AGI22044.1	AGI23696.1	H681_00810	H681_09110	COG0835 Chemotaxis signal transduction protein.	CheW domain-containing protein.	0.921
AGI22044.1	AGI23697.1	H681_00810	H681_09115	COG0835 Chemotaxis signal transduction protein.	COG0835 Chemotaxis signal transduction protein.	0.912
AGI22044.1	AGI25129.1	H681_00810	H681_16305	COG0835 Chemotaxis signal transduction protein.	CheW protein; COG0835 Chemotaxis signal transduction protein.	0.791
AGI22044.1	cheB-2	H681_00810	H681_09090	COG0835 Chemotaxis signal transduction protein.	Chemotaxis-specific protein-glutamate methyltransferase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.957
AGI22045.1	AGI22044.1	H681_00815	H681_00810	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	COG0835 Chemotaxis signal transduction protein.	0.998
AGI22045.1	AGI22064.1	H681_00815	H681_00910	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	Chemotaxis sensory transducer; COG0840 Methyl-accepting chemotaxis protein.	0.976
AGI22045.1	AGI22877.1	H681_00815	H681_04985	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	Putative chemotaxis transducer; COG0840 Methyl-accepting chemotaxis protein.	0.976
AGI22045.1	AGI23626.1	H681_00815	H681_08760	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	COG0835 Chemotaxis signal transduction protein.	0.995
AGI22045.1	AGI23690.1	H681_00815	H681_09080	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).	0.928
AGI22045.1	AGI23691.1	H681_00815	H681_09085	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	CheA signal transduction histidine kinase; COG0643 Chemotaxis protein histidine kinase and related kinases.	0.917
AGI22045.1	AGI23696.1	H681_00815	H681_09110	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	CheW domain-containing protein.	0.927
AGI22045.1	AGI23697.1	H681_00815	H681_09115	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	COG0835 Chemotaxis signal transduction protein.	0.993
AGI22045.1	AGI25129.1	H681_00815	H681_16305	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	CheW protein; COG0835 Chemotaxis signal transduction protein.	0.984
AGI22045.1	cheB-2	H681_00815	H681_09090	Putative two-component sensor; COG0643 Chemotaxis protein histidine kinase and related kinases.	Chemotaxis-specific protein-glutamate methyltransferase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.991