STRINGSTRING
AGI23722.1 AGI23722.1 AGI23723.1 AGI23723.1 AGI22002.1 AGI22002.1 AGI24299.1 AGI24299.1 AGI26623.1 AGI26623.1 AGI22000.1 AGI22000.1 gmd gmd AGI21997.1 AGI21997.1 AGI23567.1 AGI23567.1 AGI25444.1 AGI25444.1 AGI26527.1 AGI26527.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI23722.1COG0500 SAM-dependent methyltransferases. (277 aa)    
Predicted Functional Partners:
AGI23723.1
Hypothetical protein.
       0.561
AGI22002.1
COG0438 Glycosyltransferase.
 
     0.557
AGI24299.1
Alpha-2 type XI collagen.
  
    0.464
AGI26623.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.461
AGI22000.1
ABC transporter permease; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.449
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.411
AGI21997.1
Oxidoreductase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
  
 0.407
AGI23567.1
ABC transporter ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
 
 0.405
AGI25444.1
Type IV pilus assembly PilZ.
  
     0.404
AGI26527.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.400
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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