Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGI22299.1 | AGI23452.1 | H681_02085 | H681_07880 | COG0281 Malic enzyme. | COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.914 |
AGI22299.1 | AGI23771.1 | H681_02085 | H681_09485 | COG0281 Malic enzyme. | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.940 |
AGI22299.1 | AGI24079.1 | H681_02085 | H681_11045 | COG0281 Malic enzyme. | COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases. | 0.914 |
AGI22299.1 | AGI26801.1 | H681_02085 | H681_24670 | COG0281 Malic enzyme. | COG5016 Pyruvate/oxaloacetate carboxyltransferase. | 0.942 |
AGI22299.1 | eno | H681_02085 | H681_07660 | COG0281 Malic enzyme. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. | 0.459 |
AGI22299.1 | lldD | H681_02085 | H681_21195 | COG0281 Malic enzyme. | L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain. | 0.914 |
AGI22299.1 | pckA | H681_02085 | H681_23435 | COG0281 Malic enzyme. | Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family. | 0.609 |
AGI22299.1 | pgi | H681_02085 | H681_20990 | COG0281 Malic enzyme. | COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.434 |
AGI23452.1 | AGI22299.1 | H681_07880 | H681_02085 | COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | COG0281 Malic enzyme. | 0.914 |
AGI23452.1 | AGI23771.1 | H681_07880 | H681_09485 | COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.933 |
AGI23452.1 | AGI24079.1 | H681_07880 | H681_11045 | COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases. | 0.920 |
AGI23452.1 | AGI26801.1 | H681_07880 | H681_24670 | COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | COG5016 Pyruvate/oxaloacetate carboxyltransferase. | 0.903 |
AGI23452.1 | lldD | H681_07880 | H681_21195 | COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain. | 0.920 |
AGI23771.1 | AGI22299.1 | H681_09485 | H681_02085 | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | COG0281 Malic enzyme. | 0.940 |
AGI23771.1 | AGI23452.1 | H681_09485 | H681_07880 | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.933 |
AGI23771.1 | AGI23772.1 | H681_09485 | H681_09490 | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | Putative hydroxypyruvate reductase; COG2379 Putative glycerate kinase. | 0.970 |
AGI23771.1 | AGI24079.1 | H681_09485 | H681_11045 | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases. | 0.927 |
AGI23771.1 | AGI26801.1 | H681_09485 | H681_24670 | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | COG5016 Pyruvate/oxaloacetate carboxyltransferase. | 0.949 |
AGI23771.1 | eno | H681_09485 | H681_07660 | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. | 0.981 |
AGI23771.1 | gmk | H681_09485 | H681_24235 | COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.932 |
page 1 of 4