Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGI22905.1 | AGI23460.1 | H681_05125 | H681_07920 | Lipopolysaccharide biosynthetic protein LpxO1; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | Hypothetical protein; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | 0.905 |
AGI22905.1 | AGI23830.1 | H681_05125 | H681_09780 | Lipopolysaccharide biosynthetic protein LpxO1; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | COG3528 Uncharacterized protein conserved in bacteria. | 0.900 |
AGI22905.1 | AGI24521.1 | H681_05125 | H681_13255 | Lipopolysaccharide biosynthetic protein LpxO1; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | Hypothetical protein; COG2194 Predicted membrane-associated, metal-dependent hydrolase. | 0.905 |
AGI22905.1 | AGI25524.1 | H681_05125 | H681_18285 | Lipopolysaccharide biosynthetic protein LpxO1; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | Hypothetical protein; COG2194 Predicted membrane-associated, metal-dependent hydrolase. | 0.905 |
AGI22905.1 | AGI26556.1 | H681_05125 | H681_23445 | Lipopolysaccharide biosynthetic protein LpxO1; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | Hypothetical protein; COG0671 Membrane-associated phospholipid phosphatase. | 0.907 |
AGI22905.1 | arnT | H681_05125 | H681_05030 | Lipopolysaccharide biosynthetic protein LpxO1; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | 4-amino-4-deoxy-L-arabinose transferase; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family. | 0.905 |
AGI23460.1 | AGI22905.1 | H681_07920 | H681_05125 | Hypothetical protein; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | Lipopolysaccharide biosynthetic protein LpxO1; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | 0.905 |
AGI23460.1 | AGI23830.1 | H681_07920 | H681_09780 | Hypothetical protein; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | COG3528 Uncharacterized protein conserved in bacteria. | 0.900 |
AGI23460.1 | AGI24521.1 | H681_07920 | H681_13255 | Hypothetical protein; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | Hypothetical protein; COG2194 Predicted membrane-associated, metal-dependent hydrolase. | 0.903 |
AGI23460.1 | AGI25524.1 | H681_07920 | H681_18285 | Hypothetical protein; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | Hypothetical protein; COG2194 Predicted membrane-associated, metal-dependent hydrolase. | 0.903 |
AGI23460.1 | AGI26556.1 | H681_07920 | H681_23445 | Hypothetical protein; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | Hypothetical protein; COG0671 Membrane-associated phospholipid phosphatase. | 0.919 |
AGI23460.1 | arnT | H681_07920 | H681_05030 | Hypothetical protein; COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases. | 4-amino-4-deoxy-L-arabinose transferase; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family. | 0.905 |
AGI23821.1 | AGI23826.1 | H681_09735 | H681_09760 | Hypothetical protein. | COG1538 Outer membrane protein. | 0.721 |
AGI23821.1 | AGI23828.1 | H681_09735 | H681_09770 | Hypothetical protein. | Beta-lactamase domain-containing protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing. | 0.543 |
AGI23821.1 | AGI23830.1 | H681_09735 | H681_09780 | Hypothetical protein. | COG3528 Uncharacterized protein conserved in bacteria. | 0.805 |
AGI23821.1 | AGI23831.1 | H681_09735 | H681_09785 | Hypothetical protein. | Hypothetical protein. | 0.849 |
AGI23826.1 | AGI23821.1 | H681_09760 | H681_09735 | COG1538 Outer membrane protein. | Hypothetical protein. | 0.721 |
AGI23826.1 | AGI23828.1 | H681_09760 | H681_09770 | COG1538 Outer membrane protein. | Beta-lactamase domain-containing protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing. | 0.716 |
AGI23826.1 | AGI23830.1 | H681_09760 | H681_09780 | COG1538 Outer membrane protein. | COG3528 Uncharacterized protein conserved in bacteria. | 0.861 |
AGI23826.1 | AGI23831.1 | H681_09760 | H681_09785 | COG1538 Outer membrane protein. | Hypothetical protein. | 0.780 |
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