STRINGSTRING
AGI23898.1 AGI23898.1 AGI25770.1 AGI25770.1 AGI23586.1 AGI23586.1 AGI22917.1 AGI22917.1 AGI25253.1 AGI25253.1 AGI22720.1 AGI22720.1 AGI25724.1 AGI25724.1 AGI22551.1 AGI22551.1 AGI25653.1 AGI25653.1 AGI24460.1 AGI24460.1 AGI22550.1 AGI22550.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI23898.1COG1289 Predicted membrane protein. (362 aa)    
Predicted Functional Partners:
AGI25770.1
Hypothetical protein.
 
   
 0.610
AGI23586.1
COG1289 Predicted membrane protein.
  
     0.598
AGI22917.1
Glycine-glutamate dipeptide porin OpdP.
  
     0.548
AGI25253.1
Hypothetical protein.
  
     0.526
AGI22720.1
Hypothetical protein.
  
     0.516
AGI25724.1
COG2964 Uncharacterized protein conserved in bacteria.
  
     0.489
AGI22551.1
COG3539 P pilus assembly protein, pilin FimA.
  
     0.473
AGI25653.1
Scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.471
AGI24460.1
Outer membrane adhesin like protein.
  
    0.459
AGI22550.1
Outer membrane usher protein; COG3188 P pilus assembly protein, porin PapC.
  
     0.445
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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