STRINGSTRING
AGI23909.1 AGI23909.1 AGI23910.1 AGI23910.1 AGI23908.1 AGI23908.1 AGI23907.1 AGI23907.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGI23909.1COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
AGI23910.1
Alcohol dehydrogenase; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
  
 0.714
AGI23908.1
RND multidrug efflux membrane fusion protein MexE; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.600
AGI23907.1
RND multidrug efflux transporter MexF; COG0841 Cation/multidrug efflux pump.
  
  
 0.432
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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