STRINGSTRING
AGI24006.1 AGI24006.1 AGI22674.1 AGI22674.1 AGI23397.1 AGI23397.1 AGI26622.1 AGI26622.1 tolB tolB AGI24005.1 AGI24005.1 AGI25471.1 AGI25471.1 bamA bamA lptD lptD AGI24004.1 AGI24004.1 AGI24895.1 AGI24895.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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Textmining
[Homology]
Score
AGI24006.1Major porin and structural outer membrane porin OprF precursor; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (351 aa)    
Predicted Functional Partners:
AGI22674.1
Putative glucose-sensitive porin; COG3659 Carbohydrate-selective porin.
   
 
 0.710
AGI23397.1
COG2825 Outer membrane protein.
 
 
 0.700
AGI26622.1
COG1596 Periplasmic protein involved in polysaccharide export.
 
 0.680
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.673
AGI24005.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.618
AGI25471.1
COG4206 Outer membrane cobalamin receptor protein.
     
 0.595
bamA
Outer membrane antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.594
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.583
AGI24004.1
Hypothetical protein.
 
   
 0.582
AGI24895.1
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 
 0.581
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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