STRINGSTRING
AGI24011.1 AGI24011.1 AGI22653.1 AGI22653.1 AGI24012.1 AGI24012.1 AGI22645.1 AGI22645.1 AGI24010.1 AGI24010.1 rsgA rsgA arnA arnA AGI24015.1 AGI24015.1 AGI24009.1 AGI24009.1 fmt fmt AGI21941.1 AGI21941.1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
AGI24011.1Protein PpkB; COG0631 Serine/threonine protein phosphatase. (556 aa)    
Predicted Functional Partners:
AGI22653.1
COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.
  
 
 0.839
AGI24012.1
Nitrite extrusion protein, nitrite facilitator; COG2223 Nitrate/nitrite transporter.
 
    0.823
AGI22645.1
Serine-threonine kinase Stk1; COG0515 Serine/threonine protein kinase.
 
 
0.808
AGI24010.1
Assimilatory nitrite reductase large subunit; COG1251 NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
    0.732
rsgA
GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
 0.723
arnA
Bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily.
  
 
 0.718
AGI24015.1
COG3707 Response regulator with putative antiterminator output domain.
 
  
 0.718
AGI24009.1
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
    0.701
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.693
AGI21941.1
16S rRNA methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.691
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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