STRINGSTRING
AGI24041.1 AGI24041.1 rnhA rnhA AGI23218.1 AGI23218.1 dnaQ dnaQ AGI22947.1 AGI22947.1 AGI25410.1 AGI25410.1 AGI25757.1 AGI25757.1 AGI25758.1 AGI25758.1 gloB gloB AGI22876.1 AGI22876.1 AGI23609.1 AGI23609.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI24041.1Hypothetical protein; COG0500 SAM-dependent methyltransferases. (253 aa)    
Predicted Functional Partners:
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.789
AGI23218.1
Sigma E regulatory protein MucB/RseB; COG3026 Negative regulator of sigma E activity.
  
     0.703
dnaQ
DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
 
  
 0.687
AGI22947.1
COG3164 Predicted membrane protein.
  
     0.678
AGI25410.1
Lipoprotein; COG3317 Uncharacterized lipoprotein.
  
     0.658
AGI25757.1
Alginate-c5-mannuronan-epimerase AlgG.
  
     0.655
AGI25758.1
Alginate biosynthesis protein AlgX.
  
     0.637
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.636
AGI22876.1
Signaling modulator of AmpD, AmpE; COG3725 Membrane protein required for beta-lactamase induction.
  
     0.625
AGI23609.1
DNA binding-protein.
  
     0.602
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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