AGI24843.1 protein (Pseudomonas sp. ATCC 13867)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGI24843.1

COG0515 Serine/threonine protein kinase. (141 aa)

Predicted Functional Partners:

AGI24841.1

0.907

AGI24842.1

0.906

AGI24840.1

0.897

AGI24839.1

0.882

AGI24846.1

0.842

AGI24844.1

0.820

AGI24848.1

0.790

AGI24845.1

0.787

AGI24854.1

0.787

AGI24849.1

0.772

Your Current Organism:

Pseudomonas sp. ATCC 13867

NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI24839.1	AGI24840.1	H681_14855	H681_14860	COG3515 Uncharacterized protein conserved in bacteria.	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	0.958
AGI24839.1	AGI24841.1	H681_14855	H681_14865	COG3515 Uncharacterized protein conserved in bacteria.	Type VI secretion protein DotU; COG3455 Uncharacterized protein conserved in bacteria.	0.962
AGI24839.1	AGI24842.1	H681_14855	H681_14870	COG3515 Uncharacterized protein conserved in bacteria.	COG3522 Uncharacterized protein conserved in bacteria.	0.959
AGI24839.1	AGI24843.1	H681_14855	H681_14875	COG3515 Uncharacterized protein conserved in bacteria.	COG0515 Serine/threonine protein kinase.	0.882
AGI24839.1	AGI24844.1	H681_14855	H681_14880	COG3515 Uncharacterized protein conserved in bacteria.	COG3516 Uncharacterized protein conserved in bacteria.	0.954
AGI24839.1	AGI24845.1	H681_14855	H681_14885	COG3515 Uncharacterized protein conserved in bacteria.	COG3517 Uncharacterized protein conserved in bacteria.	0.906
AGI24839.1	AGI24846.1	H681_14855	H681_14890	COG3515 Uncharacterized protein conserved in bacteria.	COG3157 Hemolysin-coregulated protein (uncharacterized).	0.945
AGI24839.1	AGI24848.1	H681_14855	H681_14900	COG3515 Uncharacterized protein conserved in bacteria.	Type VI secretion protein VasA; COG3519 Uncharacterized protein conserved in bacteria.	0.885
AGI24839.1	AGI24849.1	H681_14855	H681_14905	COG3515 Uncharacterized protein conserved in bacteria.	COG3520 Uncharacterized protein conserved in bacteria.	0.943
AGI24839.1	AGI24854.1	H681_14855	H681_14930	COG3515 Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.711
AGI24840.1	AGI24839.1	H681_14860	H681_14855	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	COG3515 Uncharacterized protein conserved in bacteria.	0.958
AGI24840.1	AGI24841.1	H681_14860	H681_14865	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	Type VI secretion protein DotU; COG3455 Uncharacterized protein conserved in bacteria.	0.967
AGI24840.1	AGI24842.1	H681_14860	H681_14870	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	COG3522 Uncharacterized protein conserved in bacteria.	0.958
AGI24840.1	AGI24843.1	H681_14860	H681_14875	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	COG0515 Serine/threonine protein kinase.	0.897
AGI24840.1	AGI24844.1	H681_14860	H681_14880	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	COG3516 Uncharacterized protein conserved in bacteria.	0.893
AGI24840.1	AGI24845.1	H681_14860	H681_14885	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	COG3517 Uncharacterized protein conserved in bacteria.	0.901
AGI24840.1	AGI24846.1	H681_14860	H681_14890	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	COG3157 Hemolysin-coregulated protein (uncharacterized).	0.873
AGI24840.1	AGI24848.1	H681_14860	H681_14900	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	Type VI secretion protein VasA; COG3519 Uncharacterized protein conserved in bacteria.	0.862
AGI24840.1	AGI24849.1	H681_14860	H681_14905	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	COG3520 Uncharacterized protein conserved in bacteria.	0.863
AGI24840.1	AGI24854.1	H681_14860	H681_14930	Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.775