STRINGSTRING
AGI25000.1 AGI25000.1 AGI24999.1 AGI24999.1 AGI24293.1 AGI24293.1 AGI25147.1 AGI25147.1 AGI26137.1 AGI26137.1 AGI22550.1 AGI22550.1 AGI26235.1 AGI26235.1 AGI23117.1 AGI23117.1 AGI23094.1 AGI23094.1 AGI24511.1 AGI24511.1 AGI23052.1 AGI23052.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI25000.1POTRA domain-containing protein, ShlB-type; COG2831 Hemolysin activation/secretion protein. (555 aa)    
Predicted Functional Partners:
AGI24999.1
Hypothetical protein.
 
 
 0.921
AGI24293.1
Hemagglutination activity domain protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
 
   
 0.621
AGI25147.1
Hypothetical protein.
  
     0.504
AGI26137.1
Oxidoreductase; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
  
     0.490
AGI22550.1
Outer membrane usher protein; COG3188 P pilus assembly protein, porin PapC.
  
  
 0.435
AGI26235.1
COG2982 Uncharacterized protein involved in outer membrane biogenesis.
  
    0.433
AGI23117.1
Hypothetical protein.
  
     0.427
AGI23094.1
Usher; COG3188 P pilus assembly protein, porin PapC.
  
  
 0.421
AGI24511.1
Transmembrane regulator PrtR; COG5662 Predicted transmembrane transcriptional regulator (anti-sigma factor).
  
     0.411
AGI23052.1
COG4655 Predicted membrane protein.
  
     0.402
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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