AGI25002.1 protein (Pseudomonas sp. ATCC 13867)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGI25002.1

Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport. (443 aa)

Predicted Functional Partners:

AGI26902.1

0.726

AGI25003.1

0.602

AGI25001.1

0.544

AGI26151.1

0.516

AGI22152.1

0.503

AGI24107.1

0.499

Your Current Organism:

Pseudomonas sp. ATCC 13867

NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI22152.1	AGI25002.1	H681_01350	H681_15670	Sterol desaturase-like protein; COG3000 Sterol desaturase.	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	0.503
AGI24107.1	AGI25002.1	H681_11185	H681_15670	Bile acid:sodium symporter; COG0385 Predicted Na+-dependent transporter.	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	0.499
AGI24107.1	AGI26902.1	H681_11185	H681_25175	Bile acid:sodium symporter; COG0385 Predicted Na+-dependent transporter.	NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.	0.432
AGI25001.1	AGI25002.1	H681_15665	H681_15670	Hypothetical protein; COG0421 Spermidine synthase.	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	0.544
AGI25001.1	AGI25003.1	H681_15665	H681_15675	Hypothetical protein; COG0421 Spermidine synthase.	Phospho-2-dehydro-3-deoxyheptonate aldolase; COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.	0.470
AGI25002.1	AGI22152.1	H681_15670	H681_01350	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	Sterol desaturase-like protein; COG3000 Sterol desaturase.	0.503
AGI25002.1	AGI24107.1	H681_15670	H681_11185	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	Bile acid:sodium symporter; COG0385 Predicted Na+-dependent transporter.	0.499
AGI25002.1	AGI25001.1	H681_15670	H681_15665	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	Hypothetical protein; COG0421 Spermidine synthase.	0.544
AGI25002.1	AGI25003.1	H681_15670	H681_15675	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	Phospho-2-dehydro-3-deoxyheptonate aldolase; COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.	0.602
AGI25002.1	AGI26151.1	H681_15670	H681_21420	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	Putative signal transduction protein with EFhand domain; COG5126 Ca2+-binding protein (EF-Hand superfamily).	0.516
AGI25002.1	AGI26902.1	H681_15670	H681_25175	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.	0.726
AGI25003.1	AGI25001.1	H681_15675	H681_15665	Phospho-2-dehydro-3-deoxyheptonate aldolase; COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.	Hypothetical protein; COG0421 Spermidine synthase.	0.470
AGI25003.1	AGI25002.1	H681_15675	H681_15670	Phospho-2-dehydro-3-deoxyheptonate aldolase; COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	0.602
AGI26151.1	AGI25002.1	H681_21420	H681_15670	Putative signal transduction protein with EFhand domain; COG5126 Ca2+-binding protein (EF-Hand superfamily).	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	0.516
AGI26902.1	AGI24107.1	H681_25175	H681_11185	NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.	Bile acid:sodium symporter; COG0385 Predicted Na+-dependent transporter.	0.432
AGI26902.1	AGI25002.1	H681_25175	H681_15670	NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.	Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.	0.726