STRINGSTRING
AGI25326.1 AGI25326.1 AGI25327.1 AGI25327.1 AGI23189.1 AGI23189.1 AGI23514.1 AGI23514.1 AGI23192.1 AGI23192.1 AGI23193.1 AGI23193.1 AGI23513.1 AGI23513.1 AGI24175.1 AGI24175.1 AGI23194.1 AGI23194.1 AGI23512.1 AGI23512.1 AGI24176.1 AGI24176.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI25326.1COG3672 Predicted periplasmic protein. (233 aa)    
Predicted Functional Partners:
AGI25327.1
Diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain.
 
 
 0.958
AGI23189.1
Protein LapD; COG2199 FOG: GGDEF domain.
 
 
 0.830
AGI23514.1
COG1538 Outer membrane protein.
 
   
 0.790
AGI23192.1
COG1538 Outer membrane protein.
 
   
 0.789
AGI23193.1
Type I toxin efflux ATP-binding protein; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.788
AGI23513.1
ABC transporter-like protein; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.788
AGI24175.1
COG1538 Outer membrane protein.
 
   
 0.773
AGI23194.1
Type I secretion membrane fusion protein, HlyD; COG0845 Membrane-fusion protein.
 
  
 0.769
AGI23512.1
COG0845 Membrane-fusion protein.
 
  
 0.767
AGI24176.1
Putative ABC transporter ATP-binding protein/permease; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.767
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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