STRINGSTRING
AGI25327.1 AGI25327.1 AGI25326.1 AGI25326.1 AGI25157.1 AGI25157.1 AGI25864.1 AGI25864.1 AGI22166.1 AGI22166.1 AGI22722.1 AGI22722.1 AGI26636.1 AGI26636.1 AGI23453.1 AGI23453.1 AGI26862.1 AGI26862.1 AGI23072.1 AGI23072.1 AGI25029.1 AGI25029.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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[Homology]
Score
AGI25327.1Diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. (650 aa)    
Predicted Functional Partners:
AGI25326.1
COG3672 Predicted periplasmic protein.
 
 
 0.958
AGI25157.1
PAS/PAC sensor-containing diguanylate cyclase; COG2202 FOG: PAS/PAC domain.
 
 
 0.906
AGI25864.1
Hypothetical protein; COG3322 Predicted periplasmic ligand-binding sensor domain.
 
 
 0.896
AGI22166.1
PAS/PAC sensor-containing diguanylate cyclase; COG2199 FOG: GGDEF domain.
 
 
 0.891
AGI22722.1
Multi-sensor hybrid histidine kinase; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
  
 0.871
AGI26636.1
Sensory box/GGDEF domain-containing protein; COG2202 FOG: PAS/PAC domain.
 
 
 0.860
AGI23453.1
Sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase.
  
  
 0.859
AGI26862.1
Two-component sensor; COG0642 Signal transduction histidine kinase.
  
  
 0.859
AGI23072.1
Two component response regulator; COG0784 FOG: CheY-like receiver.
 
  
 0.856
AGI25029.1
Putative two-component response regulator; COG2199 FOG: GGDEF domain.
 
 
 0.852
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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