Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGI25499.1 | AGI25500.1 | H681_18160 | H681_18165 | Hypothetical protein. | Putative sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.865 |
AGI25499.1 | AGI25501.1 | H681_18160 | H681_18170 | Hypothetical protein. | COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III. | 0.800 |
AGI25499.1 | AGI25984.1 | H681_18160 | H681_20585 | Hypothetical protein. | Hypothetical protein. | 0.537 |
AGI25500.1 | AGI25499.1 | H681_18165 | H681_18160 | Putative sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.865 |
AGI25500.1 | AGI25501.1 | H681_18165 | H681_18170 | Putative sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III. | 0.814 |
AGI25501.1 | AGI25499.1 | H681_18170 | H681_18160 | COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III. | Hypothetical protein. | 0.800 |
AGI25501.1 | AGI25500.1 | H681_18170 | H681_18165 | COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III. | Putative sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.814 |
AGI25984.1 | AGI25499.1 | H681_20585 | H681_18160 | Hypothetical protein. | Hypothetical protein. | 0.537 |