STRINGSTRING
AGI25709.1 AGI25709.1 AGI25711.1 AGI25711.1 AGI25710.1 AGI25710.1 AGI25712.1 AGI25712.1 AGI25714.1 AGI25714.1 AGI25713.1 AGI25713.1 AGI25716.1 AGI25716.1 hemH hemH AGI25715.1 AGI25715.1 hemC hemC AGI26817.1 AGI26817.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AGI25709.1Heme d1 biosynthesis protein NirJ; COG0535 Predicted Fe-S oxidoreductases; Belongs to the precorrin methyltransferase family. (651 aa)    
Predicted Functional Partners:
AGI25711.1
COG1522 Transcriptional regulators.
 
  
 0.978
AGI25710.1
Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators.
 
  
 0.976
AGI25712.1
COG1522 Transcriptional regulators.
  
 0.976
AGI25714.1
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
 
  
 0.967
AGI25713.1
Cytochrome d1, heme region.
 
  
 0.964
AGI25716.1
COG2010 Cytochrome c, mono- and diheme variants.
 
  
 0.955
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.923
AGI25715.1
COG2863 Cytochrome c553.
     
 0.774
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
   
 0.762
AGI26817.1
COG3256 Nitric oxide reductase large subunit; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.701
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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