STRINGSTRING
AGI25879.1 AGI25879.1 AGI25880.1 AGI25880.1 AGI25878.1 AGI25878.1 AGI25392.1 AGI25392.1 AGI24910.1 AGI24910.1 AGI25877.1 AGI25877.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI25879.1Transcriptional regulator OruR; COG2207 AraC-type DNA-binding domain-containing proteins. (339 aa)    
Predicted Functional Partners:
AGI25880.1
Metal-dependent hydrolase-like protein; COG3687 Predicted metal-dependent hydrolase.
 
     0.701
AGI25878.1
Beta-lactamase domain-containing protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.584
AGI25392.1
Putative hydrolase; COG3687 Predicted metal-dependent hydrolase.
  
     0.479
AGI24910.1
Hydrolase; COG3687 Predicted metal-dependent hydrolase.
  
     0.450
AGI25877.1
Lipoprotein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
       0.419
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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