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AGI25895.1 AGI25895.1 AGI26592.1 AGI26592.1 rsmC rsmC AGI23064.1 AGI23064.1 AGI25896.1 AGI25896.1 AGI25893.1 AGI25893.1 AGI25892.1 AGI25892.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI25895.1Lysine-specific permease; COG0833 Amino acid transporters. (485 aa)    
Predicted Functional Partners:
AGI26592.1
COG0531 Amino acid transporters.
  
   
 0.575
rsmC
Ribosomal RNA small subunit methyltransferase C; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family.
       0.538
AGI23064.1
Hypothetical protein.
  
  
 0.440
AGI25896.1
COG2119 Predicted membrane protein.
       0.426
AGI25893.1
Hypothetical protein.
       0.425
AGI25892.1
COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.417
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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