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cmoM cmoM AGI26154.1 AGI26154.1 cmoA cmoA AGI26156.1 AGI26156.1 AGI25188.1 AGI25188.1 cmoB cmoB AGI26153.1 AGI26153.1 mnmC mnmC AGI23473.1 AGI23473.1 AGI26152.1 AGI26152.1 AGI26158.1 AGI26158.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
cmoMHypothetical protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family. (256 aa)    
Predicted Functional Partners:
AGI26154.1
Hypothetical protein; COG1694 Predicted pyrophosphatase.
       0.800
cmoA
Hypothetical protein; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
 
 
 0.722
AGI26156.1
Hypothetical protein.
 
     0.695
AGI25188.1
Hypothetical protein; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
 
 
   0.659
cmoB
tRNA mo(5)U34 methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
 
   
 0.637
AGI26153.1
Hypothetical protein; COG2030 Acyl dehydratase.
       0.625
mnmC
Bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
  
 
 
 0.565
AGI23473.1
COG3100 Uncharacterized protein conserved in bacteria.
 
     0.482
AGI26152.1
Putative transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
       0.456
AGI26158.1
GNAT family acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.454
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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