AGI26408.1 protein (Pseudomonas sp. ATCC 13867)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGI26408.1

COG4097 Predicted ferric reductase. (434 aa)

Predicted Functional Partners:

AGI26216.1

0.766

AGI26409.1

0.514

AGI24168.1

0.439

Your Current Organism:

Pseudomonas sp. ATCC 13867

NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI24168.1	AGI26408.1	H681_11490	H681_22705	Oxidoreductase FAD-binding subunit; COG0369 Sulfite reductase, alpha subunit (flavoprotein).	COG4097 Predicted ferric reductase.	0.439
AGI26216.1	AGI26408.1	H681_21745	H681_22705	Hypothetical protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.	COG4097 Predicted ferric reductase.	0.766
AGI26408.1	AGI24168.1	H681_22705	H681_11490	COG4097 Predicted ferric reductase.	Oxidoreductase FAD-binding subunit; COG0369 Sulfite reductase, alpha subunit (flavoprotein).	0.439
AGI26408.1	AGI26216.1	H681_22705	H681_21745	COG4097 Predicted ferric reductase.	Hypothetical protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.	0.766
AGI26408.1	AGI26409.1	H681_22705	H681_22710	COG4097 Predicted ferric reductase.	Hypothetical protein; COG1409 Predicted phosphohydrolases.	0.514
AGI26409.1	AGI26408.1	H681_22710	H681_22705	Hypothetical protein; COG1409 Predicted phosphohydrolases.	COG4097 Predicted ferric reductase.	0.514