Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGI26799.1 | AGI26800.1 | H681_24660 | H681_24665 | Hypothetical protein; COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | COG2863 Cytochrome c553. | 0.433 |
AGI26799.1 | putA | H681_24660 | H681_11165 | Hypothetical protein; COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.407 |
AGI26800.1 | AGI26799.1 | H681_24665 | H681_24660 | COG2863 Cytochrome c553. | Hypothetical protein; COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | 0.433 |
putA | AGI26799.1 | H681_11165 | H681_24660 | Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Hypothetical protein; COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism. | 0.407 |