Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGI23927.1 | AGI26822.1 | H681_10265 | H681_24775 | Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. | COG4654 Cytochrome c551/c552. | 0.900 |
AGI25710.1 | AGI25711.1 | H681_19215 | H681_19220 | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | COG1522 Transcriptional regulators. | 0.999 |
AGI25710.1 | AGI25712.1 | H681_19215 | H681_19225 | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | COG1522 Transcriptional regulators. | 0.941 |
AGI25710.1 | AGI25713.1 | H681_19215 | H681_19230 | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | Cytochrome d1, heme region. | 0.984 |
AGI25710.1 | AGI25714.1 | H681_19215 | H681_19235 | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants. | 0.986 |
AGI25710.1 | AGI26818.1 | H681_19215 | H681_24755 | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | Nitric-oxide reductase subunit C; COG2010 Cytochrome c, mono- and diheme variants. | 0.879 |
AGI25710.1 | AGI26822.1 | H681_19215 | H681_24775 | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | COG4654 Cytochrome c551/c552. | 0.694 |
AGI25710.1 | AGI26823.1 | H681_19215 | H681_24780 | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | Regulatory protein; COG3901 Regulator of nitric oxide reductase transcription. | 0.803 |
AGI25710.1 | nosZ | H681_19215 | H681_24785 | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family. | 0.811 |
AGI25711.1 | AGI25710.1 | H681_19220 | H681_19215 | COG1522 Transcriptional regulators. | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | 0.999 |
AGI25711.1 | AGI25712.1 | H681_19220 | H681_19225 | COG1522 Transcriptional regulators. | COG1522 Transcriptional regulators. | 0.948 |
AGI25711.1 | AGI25713.1 | H681_19220 | H681_19230 | COG1522 Transcriptional regulators. | Cytochrome d1, heme region. | 0.988 |
AGI25711.1 | AGI25714.1 | H681_19220 | H681_19235 | COG1522 Transcriptional regulators. | Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants. | 0.987 |
AGI25711.1 | AGI26818.1 | H681_19220 | H681_24755 | COG1522 Transcriptional regulators. | Nitric-oxide reductase subunit C; COG2010 Cytochrome c, mono- and diheme variants. | 0.871 |
AGI25711.1 | AGI26822.1 | H681_19220 | H681_24775 | COG1522 Transcriptional regulators. | COG4654 Cytochrome c551/c552. | 0.694 |
AGI25711.1 | AGI26823.1 | H681_19220 | H681_24780 | COG1522 Transcriptional regulators. | Regulatory protein; COG3901 Regulator of nitric oxide reductase transcription. | 0.753 |
AGI25711.1 | nosZ | H681_19220 | H681_24785 | COG1522 Transcriptional regulators. | Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family. | 0.815 |
AGI25712.1 | AGI25710.1 | H681_19225 | H681_19215 | COG1522 Transcriptional regulators. | Heme d1 biosynthesis protein NirH; COG1522 Transcriptional regulators. | 0.941 |
AGI25712.1 | AGI25711.1 | H681_19225 | H681_19220 | COG1522 Transcriptional regulators. | COG1522 Transcriptional regulators. | 0.948 |
AGI25712.1 | AGI25713.1 | H681_19225 | H681_19230 | COG1522 Transcriptional regulators. | Cytochrome d1, heme region. | 0.987 |
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