STRINGSTRING
MDS_0030 MDS_0030 MDS_0031 MDS_0031 MDS_2186 MDS_2186 MDS_0029 MDS_0029 rpmE rpmE hisF hisF MDS_0532 MDS_0532 MDS_4448 MDS_4448 MDS_4240 MDS_4240 MDS_0026 MDS_0026 MDS_0025 MDS_0025
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0030Hypothetical protein. (142 aa)    
Predicted Functional Partners:
MDS_0031
Hypothetical protein.
  
 
 0.997
MDS_2186
PaaR repeat-containing protein.
  
 
 0.856
MDS_0029
Rhs-family protein.
  
  
 0.854
rpmE
50S ribosomal protein L31P; Binds the 23S rRNA.
   
  
 0.767
hisF
Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
   
    0.763
MDS_0532
Putative FMN oxidoreductase.
   
    0.754
MDS_4448
Sarcosine oxidase alpha subunit family protein; Belongs to the GcvT family.
   
    0.754
MDS_4240
Riboflavin synthase subunit alpha.
   
    0.735
MDS_0026
Hypothetical protein.
  
  
 0.702
MDS_0025
Hypothetical protein.
  
    0.688
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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