STRINGSTRING
MDS_0043 MDS_0043 MDS_0044 MDS_0044 MDS_1945 MDS_1945 MDS_0045 MDS_0045 polA polA glyS glyS glyQ glyQ MDS_0046 MDS_0046 MDS_1946 MDS_1946 MDS_0040 MDS_0040 MDS_0039 MDS_0039
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0043DNA-3-methyladenine glycosylase I. (184 aa)    
Predicted Functional Partners:
MDS_0044
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
       0.800
MDS_1945
methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
   
 0.756
MDS_0045
Lipid A biosynthesis lauroyl acyltransferase.
  
  
 0.701
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.617
glyS
glycyl-tRNA synthetase subunit beta.
       0.569
glyQ
glycyl-tRNA synthetase subunit alpha.
       0.569
MDS_0046
Type IV pilus assembly PilZ.
     
 0.498
MDS_1946
Alcohol dehydrogenase.
     
 0.478
MDS_0040
D,D-heptose 1,7-bisphosphate phosphatase.
       0.451
MDS_0039
Phospholipid/glycerol acyltransferase.
       0.444
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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