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MDS_0069 MDS_0069 def def MDS_0070 MDS_0070 MDS_0071 MDS_0071 fmt fmt MDS_3298 MDS_3298 MDS_0545 MDS_0545 MDS_2659 MDS_2659 MDS_4579 MDS_4579 MDS_2521 MDS_2521 polA polA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0069TPR repeat-containing protein. (108 aa)    
Predicted Functional Partners:
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
   0.629
MDS_0070
Potassium transporter peripheral membrane component.
       0.611
MDS_0071
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.605
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.605
MDS_3298
Peptidase M23B.
   
 
 0.527
MDS_0545
Esterase EstA.
 
   0.516
MDS_2659
Hypothetical protein.
  
     0.495
MDS_4579
Peptidase M23B.
   
 
 0.484
MDS_2521
Cell division inhibitor SulA, putative.
  
     0.440
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.412
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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