STRINGSTRING
betC betC MDS_0082 MDS_0082 MDS_2781 MDS_2781 MDS_0084 MDS_0084 MDS_3156 MDS_3156 MDS_0061 MDS_0061 rpoA rpoA MDS_0081 MDS_0081 MDS_2853 MDS_2853 MDS_1729 MDS_1729 MDS_4324 MDS_4324
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betCSulfatase. (503 aa)    
Predicted Functional Partners:
MDS_0082
Substrate-binding region of ABC-type glycine betaine transport system.
 
     0.665
MDS_2781
Putative radical SAM protein.
  
 
 0.651
MDS_0084
Regulatory protein, LysR:LysR, substrate-binding protein; Belongs to the LysR transcriptional regulatory family.
       0.594
MDS_3156
Hypothetical protein.
  
 
 0.586
MDS_0061
GCN5-related N-acetyltransferase.
  
     0.565
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.553
MDS_0081
Sulphate transporter.
     
 0.544
MDS_2853
Amine oxidase.
  
     0.541
MDS_1729
Amidase.
  
   0.534
MDS_4324
Hypothetical protein.
  
   0.534
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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