STRINGSTRING
MDS_0089 MDS_0089 MDS_0768 MDS_0768 MDS_0617 MDS_0617 MDS_0939 MDS_0939 MDS_0090 MDS_0090 kup kup MDS_0070 MDS_0070 MDS_0088 MDS_0088 MDS_1488 MDS_1488 MDS_1498 MDS_1498 ribB ribB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
MDS_0089Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (575 aa)    
Predicted Functional Partners:
MDS_0768
Membrane protein-like protein.
  
    0.675
MDS_0617
Hypothetical protein.
  
  
 0.543
MDS_0939
CaCA family Na(+)/Ca(+) antiporter.
 
   
 0.529
MDS_0090
Sulphate transporter.
       0.511
kup
Kup system potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
 
   
 0.499
MDS_0070
Potassium transporter peripheral membrane component.
     
 0.480
MDS_0088
Short-chain dehydrogenase/reductase SDR.
     
 0.475
MDS_1488
NADH dehydrogenase (quinone).
     
 0.456
MDS_1498
Putative monovalent cation/H+ antiporter subunit A.
     
 0.456
ribB
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
   0.452
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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