STRINGSTRING
MDS_0095 MDS_0095 MDS_0840 MDS_0840 MDS_0914 MDS_0914 MDS_3383 MDS_3383 MDS_4841 MDS_4841 MDS_0263 MDS_0263 MDS_0268 MDS_0268 MDS_0086 MDS_0086 MDS_0094 MDS_0094 MDS_1984 MDS_1984 MDS_2135 MDS_2135
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0095LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
MDS_0840
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.685
MDS_0914
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.632
MDS_3383
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.632
MDS_4841
LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.629
MDS_0263
LysR family transcriptional regulator.
  
     0.617
MDS_0268
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.617
MDS_0086
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.614
MDS_0094
Hypothetical protein.
       0.611
MDS_1984
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.596
MDS_2135
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.589
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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