STRINGSTRING
MDS_0103 MDS_0103 MDS_0085 MDS_0085 MDS_4099 MDS_4099 MDS_3058 MDS_3058 MDS_4394 MDS_4394 MDS_0105 MDS_0105 MDS_0104 MDS_0104 MDS_3643 MDS_3643 MDS_0106 MDS_0106 MDS_4357 MDS_4357 ribB ribB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0103Nucleoside recognition domain-containing protein. (409 aa)    
Predicted Functional Partners:
MDS_0085
D-alanyl-D-alanine endopeptidase; Belongs to the peptidase S11 family.
  
  
 0.686
MDS_4099
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 0.686
MDS_3058
Nucleoside recognition domain-containing protein.
  
  
 0.670
MDS_4394
Nucleoside recognition domain-containing protein.
  
  
 0.670
MDS_0105
Hypothetical protein.
       0.664
MDS_0104
Hypothetical protein.
       0.647
MDS_3643
Hypothetical protein.
   
  
 0.633
MDS_0106
Hypothetical protein.
       0.577
MDS_4357
SpoVR family protein.
  
  
 0.541
ribB
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
       0.531
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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