STRINGSTRING
MDS_0117 MDS_0117 MDS_2930 MDS_2930 MDS_2843 MDS_2843 MDS_3305 MDS_3305 MDS_4063 MDS_4063 MDS_2936 MDS_2936 MDS_1928 MDS_1928 MDS_2937 MDS_2937 MDS_2944 MDS_2944 MDS_1230 MDS_1230 ccoN-2 ccoN-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0117Alcohol dehydrogenase. (340 aa)    
Predicted Functional Partners:
MDS_2930
Iron-containing alcohol dehydrogenase.
  
 0.956
MDS_2843
Class III alcohol dehydrogenase.
  
 
0.949
MDS_3305
Alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
0.949
MDS_4063
Alcohol dehydrogenase.
  
  
 
0.921
MDS_2936
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.910
MDS_1928
Alkane 1-monooxygenase.
     
 0.909
MDS_2937
Pyrrolo-quinoline quinone.
   
 
 0.906
MDS_2944
Pyrrolo-quinoline quinone.
   
 
 0.906
MDS_1230
TraR/DksA family transcriptional regulator.
   
  
 0.779
ccoN-2
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.776
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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