STRINGSTRING
MDS_0125 MDS_0125 MDS_4020 MDS_4020 MDS_0122 MDS_0122 MDS_0123 MDS_0123 MDS_0124 MDS_0124 MDS_0121 MDS_0121 MDS_0126 MDS_0126
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0125Hypothetical protein. (89 aa)    
Predicted Functional Partners:
MDS_4020
Cytochrome b561 family protein.
 
     0.784
MDS_0122
Hypothetical protein.
       0.648
MDS_0123
BNR/Asp-box repeat-containing protein.
       0.648
MDS_0124
Hypothetical protein.
 
    
0.635
MDS_0121
Sulfatase.
       0.614
MDS_0126
Histone deacetylase superfamily protein.
       0.485
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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