STRINGSTRING
MDS_0136 MDS_0136 MDS_0131 MDS_0131 MDS_0135 MDS_0135 MDS_0133 MDS_0133 MDS_0132 MDS_0132 MDS_0134 MDS_0134 MDS_0138 MDS_0138 MDS_0139 MDS_0139 MDS_0140 MDS_0140 MDS_0137 MDS_0137 MDS_0143 MDS_0143
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0136Denitrification regulatory protein NirQ. (259 aa)    
Predicted Functional Partners:
MDS_0131
Nitric oxide reductase activation protein.
 
  
 0.973
MDS_0135
Cytochrome c oxidase subunit III family protein.
 
  
 0.973
MDS_0133
Nitric oxide reductase, cytochrome c-containing subunit.
 
  
 0.970
MDS_0132
Nitric-oxide reductase subunit B.
 
  
 0.948
MDS_0134
Hypothetical protein.
  
    0.900
MDS_0138
Regulatory protein NosR.
 
  
 0.792
MDS_0139
Nitrous-oxide reductase.
 
  
 0.787
MDS_0140
Nitrous oxidase accessory protein.
 
    0.761
MDS_0137
Cytochrome c-551 precursor; This is a prokaryotic monoheme cytochrome, unreactive with mitochondrial cytochrome C oxidase or reductase. It functions in nitrite and nitrate respiration in Pseudomonas, but it is also found in other bacteria.
  
  
 0.693
MDS_0143
Lipoprotein involved in nitrous oxide reduction.
 
    0.646
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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