STRINGSTRING
MDS_0162 MDS_0162 MDS_0164 MDS_0164 MDS_0163 MDS_0163 MDS_0165 MDS_0165 cyoE cyoE MDS_0382 MDS_0382 MDS_1508 MDS_1508 MDS_1079 MDS_1079 MDS_1766 MDS_1766 MDS_0979 MDS_0979 MDS_1637 MDS_1637
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0162Hypothetical protein. (67 aa)    
Predicted Functional Partners:
MDS_0164
Hypothetical protein.
 
     0.834
MDS_0163
Hypothetical protein.
 
     0.789
MDS_0165
Cytochrome oxidase assembly.
 
    0.699
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.596
MDS_0382
Hypothetical protein.
  
     0.586
MDS_1508
Membrane protein-like protein.
  
     0.577
MDS_1079
Sel1 domain-containing protein.
  
     0.573
MDS_1766
Alginate biosynthesis transcriptional activator.
  
     0.538
MDS_0979
Hypothetical protein.
  
     0.509
MDS_1637
Hypothetical protein.
  
     0.507
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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