STRINGSTRING
MDS_0169 MDS_0169 thrB thrB MDS_2766 MDS_2766 MDS_2117 MDS_2117 MDS_2767 MDS_2767 polA polA MDS_3346 MDS_3346 MDS_3040 MDS_3040 MDS_1811 MDS_1811 MDS_2000 MDS_2000 MDS_4060 MDS_4060
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0169Hypothetical protein. (94 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; Belongs to the pseudomonas-type ThrB family.
 
    0.876
MDS_2766
Peptidase.
 
    0.799
MDS_2117
Hypothetical protein.
  
    0.769
MDS_2767
Peptidase.
  
    0.769
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.657
MDS_3346
Hypothetical protein.
  
     0.585
MDS_3040
YecA family protein; Belongs to the UPF0149 family.
  
     0.557
MDS_1811
Type IV pilus assembly PilZ.
  
     0.504
MDS_2000
Tfp pilus assembly protein FimV-like protein.
  
    0.497
MDS_4060
Hypothetical protein.
  
     0.492
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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