STRINGSTRING
MDS_0215 MDS_0215 MDS_0216 MDS_0216 MDS_0217 MDS_0217 glcB glcB glcB-2 glcB-2 MDS_2362 MDS_2362 MDS_1257 MDS_1257 MDS_3965 MDS_3965 MDS_2679 MDS_2679 gcl gcl MDS_3420 MDS_3420
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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Experiments
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[Homology]
Score
MDS_0215Glycolate oxidase iron-sulfur subunit. (405 aa)    
Predicted Functional Partners:
MDS_0216
Glycolate oxidase FAD binding subunit.
 
 
 0.999
MDS_0217
Glycolate oxidase subunit GlcD.
 
 0.999
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.956
glcB-2
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.932
MDS_2362
Isocitrate lyase.
     
 0.922
MDS_1257
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein.
    
 0.914
MDS_3965
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.914
MDS_2679
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.910
gcl
Glyoxylate carboligase; Belongs to the TPP enzyme family.
     
 0.905
MDS_3420
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase.
     
 0.905
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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