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madM madM madL madL mdcE mdcE mdcA mdcA mdcC mdcC MDS_0237 MDS_0237 MDS_0239 MDS_0239 mdcB mdcB mdcH mdcH MDS_0243 MDS_0243 MDS_0232 MDS_0232
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
madMMalonate transporter, MadM subunit. (249 aa)    
Predicted Functional Partners:
madL
Malonate transporter, MadL subunit.
 
   
 0.941
mdcE
Malonate decarboxylase, gamma subunit.
 
   
 0.866
mdcA
Malonate decarboxylase alpha subunit.
 
     0.861
mdcC
Malonate decarboxylase subunit delta; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.
 
     0.861
MDS_0237
Malonate decarboxylase subunit beta.
 
   
 0.854
MDS_0239
phosphoribosyl-dephospho-CoA transferase.
 
     0.833
mdcB
triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
     0.827
mdcH
Malonyl CoA-acyl carrier protein transacylase.
 
   
 0.710
MDS_0243
Malonate utilization transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.501
MDS_0232
F0F1-type ATP synthase, beta subunit.
 
     0.402
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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