STRINGSTRING
MDS_0243 MDS_0243 mdcE mdcE MDS_0239 MDS_0239 mdcC mdcC mdcA mdcA MDS_0237 MDS_0237 mdcB mdcB MDS_1193 MDS_1193 MDS_4664 MDS_4664 madL madL mdcH mdcH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
MDS_0243Malonate utilization transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
mdcE
Malonate decarboxylase, gamma subunit.
  
     0.757
MDS_0239
phosphoribosyl-dephospho-CoA transferase.
  
     0.755
mdcC
Malonate decarboxylase subunit delta; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.
  
     0.752
mdcA
Malonate decarboxylase alpha subunit.
  
     0.746
MDS_0237
Malonate decarboxylase subunit beta.
  
     0.734
mdcB
triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
  
     0.718
MDS_1193
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.584
MDS_4664
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.583
madL
Malonate transporter, MadL subunit.
  
     0.539
mdcH
Malonyl CoA-acyl carrier protein transacylase.
  
    0.506
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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