STRINGSTRING
MDS_0264 MDS_0264 MDS_0266 MDS_0266 MDS_0535 MDS_0535 MDS_4818 MDS_4818 MDS_3830 MDS_3830 MDS_0265 MDS_0265 MDS_0267 MDS_0267 MDS_0269 MDS_0269 MDS_3557 MDS_3557 MDS_0268 MDS_0268 MDS_0252 MDS_0252
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0264malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (348 aa)    
Predicted Functional Partners:
MDS_0266
Hypothetical protein.
 
     0.859
MDS_0535
Membrane dipeptidase.
 
    0.822
MDS_4818
Bile acid:sodium symporter.
   
    0.804
MDS_3830
Peptidase M19, renal dipeptidase.
  
    0.799
MDS_0265
Hypothetical protein.
       0.798
MDS_0267
Hypothetical protein.
 
    0.681
MDS_0269
Hypothetical protein.
 
     0.547
MDS_3557
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.504
MDS_0268
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.446
MDS_0252
Altronate dehydratase.
 
   
 0.430
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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