Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
MDS_0294 | MDS_0303 | FAD dependent oxidoreductase. | XRE family transcriptional regulator. | 0.597 |
MDS_0294 | MDS_0400 | FAD dependent oxidoreductase. | L-glutamine synthetase. | 0.790 |
MDS_0294 | MDS_0402 | FAD dependent oxidoreductase. | L-glutamine synthetase. | 0.820 |
MDS_0294 | MDS_0403 | FAD dependent oxidoreductase. | Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.668 |
MDS_0294 | MDS_1147 | FAD dependent oxidoreductase. | Putative glutamine amidotransferase. | 0.724 |
MDS_0294 | MDS_2072 | FAD dependent oxidoreductase. | Glutamate--putrescine ligase; Belongs to the glutamine synthetase family. | 0.781 |
MDS_0294 | MDS_2073 | FAD dependent oxidoreductase. | Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.666 |
MDS_0294 | MDS_4448 | FAD dependent oxidoreductase. | Sarcosine oxidase alpha subunit family protein; Belongs to the GcvT family. | 0.834 |
MDS_0294 | MDS_4695 | FAD dependent oxidoreductase. | Glutamine synthetase, catalytic region. | 0.796 |
MDS_0294 | MDS_4858 | FAD dependent oxidoreductase. | L-glutamine synthetase. | 0.797 |
MDS_0303 | MDS_0294 | XRE family transcriptional regulator. | FAD dependent oxidoreductase. | 0.597 |
MDS_0303 | MDS_0400 | XRE family transcriptional regulator. | L-glutamine synthetase. | 0.493 |
MDS_0303 | MDS_0402 | XRE family transcriptional regulator. | L-glutamine synthetase. | 0.498 |
MDS_0303 | MDS_1147 | XRE family transcriptional regulator. | Putative glutamine amidotransferase. | 0.412 |
MDS_0303 | MDS_2072 | XRE family transcriptional regulator. | Glutamate--putrescine ligase; Belongs to the glutamine synthetase family. | 0.411 |
MDS_0303 | MDS_4695 | XRE family transcriptional regulator. | Glutamine synthetase, catalytic region. | 0.474 |
MDS_0303 | MDS_4858 | XRE family transcriptional regulator. | L-glutamine synthetase. | 0.476 |
MDS_0400 | MDS_0294 | L-glutamine synthetase. | FAD dependent oxidoreductase. | 0.790 |
MDS_0400 | MDS_0303 | L-glutamine synthetase. | XRE family transcriptional regulator. | 0.493 |
MDS_0400 | MDS_0402 | L-glutamine synthetase. | L-glutamine synthetase. | 0.823 |
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