Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0320 | MDS_0322 | MDS_0320 | MDS_0322 | HAD family hydrolase. | Hypothetical protein. | 0.612 |
MDS_0320 | MDS_1040 | MDS_0320 | MDS_1040 | HAD family hydrolase. | Bifunctional riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family. | 0.927 |
MDS_0320 | MDS_1792 | MDS_0320 | MDS_1792 | HAD family hydrolase. | Amino acid adenylation domain-containing protein. | 0.598 |
MDS_0320 | MDS_4240 | MDS_0320 | MDS_4240 | HAD family hydrolase. | Riboflavin synthase subunit alpha. | 0.909 |
MDS_0320 | MDS_4635 | MDS_0320 | MDS_4635 | HAD family hydrolase. | NAD(P)H-dependent FMN reductase. | 0.903 |
MDS_0320 | dapF | MDS_0320 | MDS_0323 | HAD family hydrolase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.554 |
MDS_0320 | lysA | MDS_0320 | MDS_0324 | HAD family hydrolase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.555 |
MDS_0320 | ribD | MDS_0320 | MDS_4241 | HAD family hydrolase. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.946 |
MDS_0320 | ribH | MDS_0320 | MDS_4238 | HAD family hydrolase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family. | 0.910 |
MDS_0320 | xerC | MDS_0320 | MDS_0321 | HAD family hydrolase. | Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.829 |
MDS_0322 | MDS_0320 | MDS_0322 | MDS_0320 | Hypothetical protein. | HAD family hydrolase. | 0.612 |
MDS_0322 | dapF | MDS_0322 | MDS_0323 | Hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.977 |
MDS_0322 | lysA | MDS_0322 | MDS_0324 | Hypothetical protein. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.804 |
MDS_0322 | ribD | MDS_0322 | MDS_4241 | Hypothetical protein. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.404 |
MDS_0322 | xerC | MDS_0322 | MDS_0321 | Hypothetical protein. | Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.719 |
MDS_1040 | MDS_0320 | MDS_1040 | MDS_0320 | Bifunctional riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family. | HAD family hydrolase. | 0.927 |
MDS_1040 | MDS_1792 | MDS_1040 | MDS_1792 | Bifunctional riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family. | Amino acid adenylation domain-containing protein. | 0.417 |
MDS_1040 | MDS_4240 | MDS_1040 | MDS_4240 | Bifunctional riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family. | Riboflavin synthase subunit alpha. | 0.940 |
MDS_1040 | MDS_4635 | MDS_1040 | MDS_4635 | Bifunctional riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family. | NAD(P)H-dependent FMN reductase. | 0.910 |
MDS_1040 | ribD | MDS_1040 | MDS_4241 | Bifunctional riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.765 |
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